
@ARTICLE{McDavid2014-kr,
  title       = "Modeling bi-modality improves characterization of cell cycle
                 on gene expression in single cells",
  author      = "McDavid, Andrew and Dennis, Lucas and Danaher, Patrick and
                 Finak, Greg and Krouse, Michael and Wang, Alice and Webster,
                 Philippa and Beechem, Joseph and Gottardo, Raphael",
  editor      = "Zhong, Sheng",
  affiliation = "Department of Statistics, University of Washington, Seattle,
                 Washington, United States of America; Vaccine and Infectious
                 Disease Division, Fred Hutchinson Cancer Research Center,
                 Seattle, Washington, United States of America. NanoString
                 Technologies, Seattle, Washington, United States of America.
                 NanoString Technologies, Seattle, Washington, United States of
                 America. Vaccine and Infectious Disease Division, Fred
                 Hutchinson Cancer Research Center, Seattle, Washington, United
                 States of America. NanoString Technologies, Seattle,
                 Washington, United States of America. BD Biosciences, San
                 Jose, California, United States of America. NanoString
                 Technologies, Seattle, Washington, United States of America.
                 NanoString Technologies, Seattle, Washington, United States of
                 America. Department of Statistics, University of Washington,
                 Seattle, Washington, United States of America; Vaccine and
                 Infectious Disease Division, Fred Hutchinson Cancer Research
                 Center, Seattle, Washington, United States of America.",
  journal     = "PLoS Comput. Biol.",
  publisher   = "Public Library of Science",
  volume      =  10,
  number      =  7,
  pages       = "e1003696",
  month       =  "1~" # jul,
  year        =  2014
}

@ARTICLE{McDavid2013-mc,
  title       = "Data exploration, quality control and testing in single-cell
                 {qPCR-based} gene expression experiments",
  author      = "McDavid, Andrew and Finak, Greg and Chattopadyay, Pratip K and
                 Dominguez, Maria and Lamoreaux, Laurie and Ma, Steven S and
                 Roederer, Mario and Gottardo, Raphael",
  affiliation = "Department of Statistics, University of Washington, Seattle,
                 WA 98195, USA.",
  journal     = "Bioinformatics",
  publisher   = "Oxford Univ Press",
  volume      =  29,
  number      =  4,
  pages       = "461--467",
  month       =  "15~" # feb,
  year        =  2013,
  language    = "en"
}

@ARTICLE{Finak2015-uz,
  title       = "{MAST}: a flexible statistical framework for assessing
                 transcriptional changes and characterizing heterogeneity in
                 single-cell {RNA} sequencing data",
  author      = "Finak, Greg and McDavid, Andrew and Yajima, Masanao and Deng,
                 Jingyuan and Gersuk, Vivian and Shalek, Alex K and Slichter,
                 Chloe K and Miller, Hannah W and McElrath, M Juliana and
                 Prlic, Martin and Linsley, Peter S and Gottardo, Raphael",
  affiliation = "Vaccine and Infectious Disease Division, Fred Hutchinson
                 Cancer Research Center, Seattle, WA, 98109, USA.
                 gfinak@fredhutch.org. Vaccine and Infectious Disease Division,
                 Fred Hutchinson Cancer Research Center, Seattle, WA, 98109,
                 USA. amcdavid@fredhutch.org. Vaccine and Infectious Disease
                 Division, Fred Hutchinson Cancer Research Center, Seattle, WA,
                 98109, USA. myajima@fredhutch.org. Vaccine and Infectious
                 Disease Division, Fred Hutchinson Cancer Research Center,
                 Seattle, WA, 98109, USA. jdeng@fredhutch.org. Benaroya
                 Research Institute at Virginia Mason, Seattle, WA, 98101, USA.
                 vgersuk@benaroyaresearch.org. Institute for Medical
                 Engineering \& Science, MIT, Boston, MA, 01239-4307, USA.
                 shalek@mit.edu. Department of Chemistry, MIT, Boston, MA,
                 01239-4307, USA. shalek@mit.edu. Ragon Institute of MGH, MIT,
                 \& Harvard, Boston, MA, 02139-3583, USA. shalek@mit.edu. Broad
                 Institute of MIT \& Harvard, Boston, MA, 01242, USA.
                 shalek@mit.edu. Vaccine and Infectious Disease Division, Fred
                 Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.
                 cslichte@fredhutch.org. Vaccine and Infectious Disease
                 Division, Fred Hutchinson Cancer Research Center, Seattle, WA,
                 98109, USA. hwmiller@fredhutch.org. Vaccine and Infectious
                 Disease Division, Fred Hutchinson Cancer Research Center,
                 Seattle, WA, 98109, USA. jmcelrat@fredhutch.org. Vaccine and
                 Infectious Disease Division, Fred Hutchinson Cancer Research
                 Center, Seattle, WA, 98109, USA. mprlic@fredhutch.org.
                 Benaroya Research Institute at Virginia Mason, Seattle, WA,
                 98101, USA. plinsley@benaroyaresearch.org. Vaccine and
                 Infectious Disease Division, Fred Hutchinson Cancer Research
                 Center, Seattle, WA, 98109, USA. rgottard@fredhutch.org.
                 Public Health Sciences Division, Fred Hutchinson Cancer
                 Research Center, Seattle, WA, 98109, USA.
                 rgottard@fredhutch.org.",
  journal     = "Genome Biol.",
  volume      =  16,
  number      =  1,
  pages       = "1--13",
  month       =  "10~" # dec,
  year        =  2015,
  language    = "en"
}

@ARTICLE{McDavid2016-rm,
  title       = "The contribution of cell cycle to heterogeneity in single-cell
                 {RNA-seq} data",
  author      = "McDavid, Andrew and Finak, Greg and Gottardo, Raphael",
  affiliation = "Vaccine and Infectious Disease Division, Fred Hutchinson
                 Cancer Research Center, Seattle, Washington, USA. Vaccine and
                 Infectious Disease Division, Fred Hutchinson Cancer Research
                 Center, Seattle, Washington, USA. Vaccine and Infectious
                 Disease Division, Fred Hutchinson Cancer Research Center,
                 Seattle, Washington, USA.",
  journal     = "Nat. Biotechnol.",
  publisher   = "Nature Publishing Group",
  volume      =  34,
  number      =  6,
  pages       = "591--593",
  month       =  "9~" # jun,
  year        =  2016,
  language    = "en"
}
